PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604806.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 647aa MW: 71828 Da PI: 6.0432

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.9	6.7e-29	57	141	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++r++k+Ckek+en++k++k++ke++++r++++ t+++f+qlea XP_013604806.1 57 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRNAKKCKEKFENVQKYHKRTKETRGGRHEGK--TYKFFSQLEA 141 8******************************************************************985555..6*****85 PP
2	trihelix	103.7	1.3e-32	414	498	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+ XP_013604806.1 414 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 498 8*******************************************************************8.99999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.934	50	114	IPR017877	Myb-like domain
SMART	SM00717	0.017	54	116	IPR001005	SANT/Myb domain
CDD	cd12203	8.76E-25	56	121	No hit	No description
Pfam	PF13837	3.8E-19	56	142	No hit	No description
SMART	SM00717	0.0011	411	473	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.131	413	471	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.2E-4	413	470	IPR009057	Homeodomain-like
Pfam	PF13837	7.1E-22	413	498	No hit	No description
CDD	cd12203	3.50E-29	414	478	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR 60 EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RNAKKCKEKF ENVQKYHKRT 120 KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL 180 TQTPPPSQPL PPHTVSFTPN PLPPPPPPSV DPPFPGGTFS SHSSSTASGM GSDDDDDMDV 240 DQAGPSSHKR KRENRGTGGG KMMELFEGLV RQVMQKQAAM QRSFLEALEK REQERLAREE 300 AWKRQEMSRL AREHEIMAQE RAASASRDAA IISLIQKITG HTIQLPHSLS SQPSPPPPAA 360 KRPSSQAVEP PLSQPIMAIP QQQVLPPPPP HQPQQQQQQE MIMSSDQSLP SSSRWPKEEI 420 LALINLRSGM EPRYQDNVPK GLLWEEISTS MKRMGYNRNA KRCKEKWENI NKYYKKVKES 480 NKKRPQDAKT CPYYHRLDLL YSSKVLGSGA GSSTSSLPQD QISTIQKQSP VSAMKPSQEG 540 DVYVHQTHGS ASSEEEEPRE ETPQGAEKPE DLVMRELMQQ KQQQEEDSMI GEYEKIEASH 600 NYNMEEEEMD EELDDDEKSA AYEIAFQSPA NRGGNGHSEP PFLTMVQ

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR  60
EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RNAKKCKEKF ENVQKYHKRT  120
KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL  180
TQTPPPSQPL PPHTVSFTPN PLPPPPPPSV DPPFPGGTFS SHSSSTASGM GSDDDDDMDV  240
DQAGPSSHKR KRENRGTGGG KMMELFEGLV RQVMQKQAAM QRSFLEALEK REQERLAREE  300
AWKRQEMSRL AREHEIMAQE RAASASRDAA IISLIQKITG HTIQLPHSLS SQPSPPPPAA  360
KRPSSQAVEP PLSQPIMAIP QQQVLPPPPP HQPQQQQQQE MIMSSDQSLP SSSRWPKEEI  420
LALINLRSGM EPRYQDNVPK GLLWEEISTS MKRMGYNRNA KRCKEKWENI NKYYKKVKES  480
NKKRPQDAKT CPYYHRLDLL YSSKVLGSGA GSSTSSLPQD QISTIQKQSP VSAMKPSQEG  540
DVYVHQTHGS ASSEEEEPRE ETPQGAEKPE DLVMRELMQQ KQQQEEDSMI GEYEKIEASH  600
NYNMEEEEMD EELDDDEKSA AYEIAFQSPA NRGGNGHSEP PFLTMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	KRNAKKCKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604806.1	0.0	PREDICTED: trihelix transcription factor GTL1-like isoform X1
Swissprot	Q9C882	0.0	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	A0A0D3DKQ7	0.0	A0A0D3DKQ7_BRAOL; Uncharacterized protein
STRING	Bra036731.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	0.0	GT-2-like 1